Does it work fine with the latest one released on (I believe) July 16? I have yet to try.
Do what Angelox said and delete your .eqg files for those zones.
For me, I had problems with zone lines and such afterwards. Porting into lavastorm yielded me stuck beneath the ground ducking underneath lava and unable to swim (a very, very prolonged death, until you drown or burn to death). Porting into nektulos was a 500 damage fall. Neriak zoned me into nektulos from ecommons. Zones from lavastorm to soldunga worked, but the nektulos to ecommons did not. Never tried anything else.
These problems may have been changed with latest database updates. Make sure you are using the latest database, whether it be custom built or from the PEQ website at
www.projecteq.net. If you have no control over the database, then I would suggest contacting your database/server administrator.