I am going to start over since I must have missed an important step somewhere.
I will use the version of the Emu that you linked which is revision 302. I am not sure what revision the PEQ is though. Here is the link to what I am using.
http://www.projecteq.net/downloads.php
I am clicking on the one at the very top. I am using the one without the maps since I have those files already.