If you have customized stuff, maybe not. It depends on what you modified. But since you do have a backup, if you source all of the files in the correct order, then there should be no problems. But since you did source everything differently, the tables may not match up and you'll get errors - I dunno. The best thing to do is try.
As for the "zone unavailable" error, it's because there's no extra zones being launched. You need at least 2 zones in order to zone into the next one. If you only launch one zone, you can't zone into another since it can't transfer you.
Under your launcher table in mysql, it should say zone 5 or something similar. That means it's telling the eqlauncher to launch 5 dynamic zones.
Since you sourced the files backwards, you basically have a naked database with no data populated in the fields. At this point I would really recommend doing it the correct way. You already have a backup, so there really isn't anything to lose at this point.
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