Thanks for the clarification Kobaz.
After running the script that Mirakus suggested, it said to cd into projecteqemu and make it. It errored out, so I tried it again and it errored out again. I'm not sure how to resolve this. Below is the error message from my second attempt.
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				make -C EMuShareMem 
make[1]: Entering directory `/home/eqemulator/projecteqemu/EMuShareMem' 
make[1]: Nothing to be done for `all'. 
make[1]: Leaving directory `/home/eqemulator/projecteqemu/EMuShareMem' 
make -C world 
make[1]: Entering directory `/home/eqemulator/projecteqemu/world' 
gcc -c -Wall -Wuninitialized -Wwrite-strings -Wcast-qual -Wcomment -Wcast-align -Wno-deprecated -g -march=i686 -O -pthread -pipe -I../common/SocketLib -DFX -D_GNU_SOURCE -DINVERSEXY -DWORLD -DDEBUG=5 -DEQDEBUG=5 -DSHAREMEM -DCATCH_CRASH -DNO_PIDLOG -DFIELD_ITEMS -DIRC -Di386 -DAPP_OPCODE_SIZE=2 -DEMBPERL -DEMBPERL_PLUGIN -DHAS_UNION_SEMUN -I/usr/include/mysql  -DBIG_JOINS=1 -fPIC  -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64  -I/usr/lib/perl/5.10/CORE  Adventure.cpp -o Adventure.o 
Adventure.cpp: In member function ‘void Adventure::MoveCorpsesToGraveyard()’: 
Adventure.cpp:381: error: ‘atoi’ was not declared in this scope 
make[1]: *** [Adventure.o] Error 1 
make[1]: Leaving directory `/home/eqemulator/projecteqemu/world' 
make: *** [all] Error 2
			
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