Just glancing at the script, this part should have made links to them:
Code:
ln -s /home/eqemu/source/EQEmuServer/EMuShareMem/libEMuShareMem.so /home/eqemu/server/libEMuShareMem.so
ln -s /home/eqemu/source/EQEmuServer/world/world /home/eqemu/server/world
ln -s /home/eqemu/source/EQEmuServer/zone/zone /home/eqemu/server/zone
ln -s /home/eqemu/source/EQEmuServer/EQEmuLoginServer/EQEmuLoginServer /home/eqemu/server/EQEmuLoginServer
ln -s /home/eqemu/source/EQEmuServer/eqlaunch/eqlaunch /home/eqemu/server/eqlaunch
ln -s /home/eqemu/source/EQEmuServer/chatserver/chatserver /home/eqemu/server/chatserver
ln -s /home/eqemu/source/EQEmuServer/mailserver/mailserver /home/eqemu/server/mailserver
If the compile failed for any reason, or that part of the script failed then you would have issues. If the files actually compiled correctly and exist in the directory then you would probably just need to run those lines again in a root shell.