If you're testing on a back-up, just upgrade them. (You can try it on both, if you like..that will provide feedback on whether this change works or not
)
If you previously ran it on a live database and fixed it manually, do not mess that one up
I still don't know what is causing the issue..which makes trouble-shooting it even harder...
The '9000' script is supposed to install/update..depending on the current state of your database.