that post is kinda confusing.
first of all why are you useing eqw? just make a .bat file to run eqgame in your eq dir, it works the same. this will get rid of your (if i read that post correctly) 2nd eq.
make a shortcut of your batchfile and put it in the eqemu directory and your golden..
-edit- the batch file should look like this...

eqgame patchme