Nil found the solution to this problem, but I'll post on it  

  I simply took my old cds reloaded EQ and moved the zone files from the original to the emulator (only the ones that gave me problems and only one zone at a time)...   I never had any problems with the mobs showing up correctly after that.
Any kind people out there know where I can find some good db's...  I know they take a lot of work so I won't be suprised if I don't get any replies.  Main concern is zone in points  and working portals.