When I coded that (long ago..) I did so with the intent of removing any traces of bots from the default database.
There was no sense in keeping them there if all other traces of bots were removed as well.
As far as functionality, I built it to run on a sequential basis; both database types include a script to remove them, so it should run from one or the other, whichever is being updated.
I think the easiest way to alleviate this problem is just to include the sql that "The_Beast" has posted above in the initial bots script.
I'm still not up to speed..so, it could take me a while to get a working solution.
And yes, I ran into this problem to with a new database I set up :(
EDIT: That manifest trigger is set to call the script if those values do exist in the old table.
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