I seem to be having a similar issue...
When I activate bots from the rules I cannot start the world server again, it throws an error that bot tables are missing.
I'm running the docker container from Akk
EDIT:
World | Info | UpdateManifest [9035] [missing] | [2022_12_04_bot_archery.sql]
World | Info | UpdateManifest [9036] [ok] | [2023_01_19_drop_bot_views.sql]
World | Info | UpdateManifest [9037] [ok] | [2023_01_22_add_name_index.sql]
World | Info | UpdateManifest [9038] [ok] | [2023_02_16_add_caster_range.sql]
World | Info | UpdateManifest [9039] [ok] | [2023_03_31_remove_bot_groups.sql]
World | Info | UpdateManifest [9040] [missing] | [2023_11_16_bot_starting_items.sql]
World | Info | UpdateManifest [9041] [missing] | [2023_12_04_bot_timers.sql]
World | Info | UpdateManifest [9042] [ok] | [2024_01_27_delete_bot_foreign_keys.sql]
World | Info | UpdateManifest [9043] [missing] | [2024_02_18_bot_starting_items_augments.sql]
World | Info | UpdateManifest [9044] [missing] | [2024_04_23_bot_extra_haste.sql]
[...]
World | Info | UpdateManifest ----------------------------------------------------------------------
World | Info | UpdateManifest Running database migrations. Please wait...
World | Info | UpdateManifest ----------------------------------------------------------------------
World | QueryErr | QueryDatabaseMulti [Table 'peq.bot_data' doesn't exist] (1146) query [ALTER TABLE `bot_data`ADD COLUMN `archery_setting` TINYINT(2) UNSIGNED NOT NULL DEFAULT '0' AFTER `enforce_spell_settings`;]
World | Error | UpdateManifest (#1146) [Table 'peq.bot_data' doesn't exist]
World | Info | UpdateManifest Required database update failed. This could be a problem
World | Info | UpdateManifest Skipping update [9035] [2022_12_04_bot_archery.sql]
World | Info | UpdateManifest [9035] [2022_12_04_bot_archery.sql] [error]
World | Error | UpdateManifest Fatal | Database migration [2022_12_04_bot_archery.sql] failed to run
World | Error | UpdateManifest Fatal | Shutting down
|
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